Grants

This section introduces only the research projects I personally led as Principal Investigator.
1. Statistical method development for analyzing single-cell RNA-seq
창의·도전연구기반지원사업 (2022.06-2024.05), Project No. 1345353534

Full Paper List

For a complete list of publications, click Google Scholar.

Packages

1. COBRA – Cell-type-specific Orthogonal Batch effect Removal Algorithm
Language: R
Repository: GitHub
Summary: An algorithm for correcting batch effects in single-cell RNA-sequencing data

2. BALLI – Bartlett-Adjusted Likelihood-based LInear model
Language: R
Repository: CRAN
Summary: A statistical method for identifying differentially expressed genes in bulk RNA-sequencing data

These publications highlight representative research accomplishments that closely align with my core research (Since 2021; *: equally contributed, †: corresponding authors).

1. Cho J*, Park K*, Choi SM, Lee J, Lee CH, Lee JK, Heo EY, Kim DK, Lee YJ, Park JS, Cho YJ, Yoon HI, Lee JH, Lee CT, Kim N, Choi KY, Lee KH, Sung J, Won S†, and Yim JJ†. Genome-wide association study of non-tuberculous mycobacterial pulmonary disease. Thorax 2021 Jan 15.

2. Shin CM*, Park K*, Kim N†, Won S, Ohn JH, Lee S, Park JH, Kang SJ, Kim JS, and Lee DH. rs2671655 Single Nucleotide Polymorphism Modulates the Risk for Gastric Cancer in Helicobacter pylori-Infected Individuals: A Genome-Wide Association Study in the Korean Population. Gastric Cancer 2022 May 24.

3. Park K, Do AR, Chung Y, Kim MJ, Rhee SJ, Yoon DH, Choi SH, Cho SJ, Kim HN†, Ahn YM†, and Won S†. Genome-wide association study implicates the role of TBXAS1 in the pathogenesis of depressive symptoms among the Korean population. Translational Psychiatry 2024 Feb 6.

4. Park K*, Lee JH*, Shin E, Jang HY, Song WJ, Kwon HS, Cho YS, Lee JE, Adcock I, Chung KF, Lee JS†, Won S†, and Kim TB†. Single-cell RNA sequencing reveals transcriptional changes in circulating immune cells from patients with severe asthma induced by biologics. Experimental & Molecular Medicine 2024 Dec 13.

5. Park K*, Shin CM*, Kim N†, Won S, Song CH, Ohn JH, Lee S, Park JH, Yie GE, Kang SJ, Kim JS, and Lee DH. rs762855 Single Nucleotide Polymorphism Modulates the Risk for Diffuse-Type Gastric Cancer in Females: A Genome-Wide Association Study in the Korean Population. Gastric Cancer 2025 Jan 25.

6. Park K*, Kim H*, Huh HJ*, Namkoong H, Hasegawa N, Nishimura T, Asakura T, Morimoto K, Kurashima A, Omae Y, Kawai Y, Tokunaga K, NTM-JRC investigators, Cho J, Yim JJ, Won S†, Jhun BW†, and Won HH†. Novel genetic loci for nontuberculous mycobacterial pulmonary disease and potential causation by low body mass index. American Journal of Respiratory and Critical Care Medicine. Accepted

Not applicable.

Not applicable.